height_profiles#

Derive height profiles across the images.

Attributes#

LOGGER

Functions#

interpolate_height_profile(→ numpy.typing.NDArray)

Interpolate heights along the maximum feret.

Module Contents#

height_profiles.LOGGER#
height_profiles.interpolate_height_profile(img: numpy.typing.NDArray, mask: numpy.typing.NDArray, **kwargs) → numpy.typing.NDArray#

Interpolate heights along the maximum feret.

Interpolates the height along the line of the maximum feret using SciPy scipy.interpolateRegularGridInterpolator https://docs.scipy.org/doc/scipy/reference/generated/scipy.interpolate.RegularGridInterpolator.html. Arguments can be passed using ‘kwargs’.

Parameters:

  • img (npt.NDArray) – Original image with heights.

  • mask (npt.NDArray) – Binary skeleton.

  • **kwargs (dict) – Keyword arguments passed on to scipy.interpolate.RegularGridInterpolator().

Returns:

Interpolated heights between the calculated feret co-cordinates.

Return type:

npt.NDArray